Standardizations of Japanese longline CPUE for bigeye and yellowfin tuna in multiple Indian Ocean regions were conducted using generalized linear models (GLM) with log normal and delta-lognormal errors. The models incorporated fishing power based on vessel ID where available, and used cluster analysis to account for targeting. The variables year-quarter, vessel ID, latlong5 (five degree latitude-longitude block), cluster and number of hooks were used in the standardization. Dominant species differed depending on clusters. The effects of each covariate differed depending on species and region. The CPUE trends were similar to those estimated using ‘traditional’ method, though with some differences due to the inclusion of vessel effects and cluster variables.