Jump to navigation
Food and Agriculture Organization

User menu

  • Contact us
  • Login

Search form

  • English
  • Français
Indian Ocean Tuna Commission
Indian Ocean Tuna Commission
  • Home
  • The Commission
    • Overview
    • Structure of the Commission
    • Scientific Committee
    • Compliance Committee
    • Standing Committee on Administration and Finance
    • Competence: Area & Species
    • History & Basic texts
    • Conservation and management measures
    • Cooperation with other organisations
    • Capacity building
    • Performance Review
    • The Secretariat
    • Secretariat Staff
    • Allocation Estimations
    • Observers to IOTC meetings
  • Science
    • Overview
    • Scientific Committee
    • Status of the stocks
    • Working Parties: Science
    • Regional Observer Scheme: Science
    • Science: Capacity Building
    • IOTC Science Glossary
    • Invited Experts and Consultants
  • Compliance
    • Overview
    • Capacity building: Compliance
    • Compliance Committee
    • Information for MCS purposes
    • Monitoring of compliance
    • Port State Measures
    • Regional Observer Programme on Transhipments
    • Reporting Templates
    • Statistical document programme
    • StatDoc Validation
    • Vessel records/ IUU Vessels List
  • Data
    • Overview
    • Reporting data to the IOTC
    • Available datasets
    • Reference data catalogue
    • Fisheries identification wizard
    • Interactive data browser
    • Status of reporting of fisheries statistics
    • Capacity building: Data
    • Tagging Data
  • Projects
  • Meetings
  • Documents
  • News
  • Educational Tools

IOTC-Population Structure of IOTC Species in the Indian Ocean: Estimation with Next Generation Sequencing Technologies

Other projects

Support to the IOTC Scientific and Compliance Committee’s Programs of work
Support to the implementation of the IOTC Regional Observer Scheme
Support to the IOTC Scientific Committee Program of Work – Aspects of the biology of IOTC species
Support to the IOTC Scientific Committee Program of Work
Scientific and technical support for the Indian Ocean key tuna species management procedure development
Support to the IOTC Scientific Committee Program of Work – Strengthening the Precautionary Approach
View more
Key facts
Duration: 
March 2015 – June 2020
Funding: 
USD 1 529 487
Beneficiaries: 
Parties to the IOTC
Partners: 
Directorate-General for Maritime Affairs and Fisheries of the European Union
Status: 
Completed
About the project: 

This project sought to describe the population structure and connectivity of four species of tuna (albacore, bigeye, skipjack and yellowfin), three tuna-like species (kawakawa, longtailtuna and narrow-barred Spanish mackerel), three billfish species (striped marlin, swordfish, Indo-Pacific sailfish) and one species of shark (blue shark) within the Indian Ocean. The results of the project were expected to improve assessments of the status of these species, leading to more informed decisions related to their conservation and management.

Project activities: 
  • Review the population structure of 11 important species associated with tuna fisheries in the Indian Ocean.
  • Assess the genetic methods to be used for the genomic characterization of the species involved.
  • Produce detailed sampling plans for port sampling in the different areas of the Indian Ocean.
  • Develop a sampling protocol to guide the collection and treatment of samples.
  • Perform genetic analysis leading to the generation of DNA genotype data from sequencing runs for albacore, blue shark, kawakawa, Indo-Pacific sailfish, longtailtuna, narrow-barred Spanish mackerel, scalloped hammerhead, striped marlin, swordfish and yellowfin tuna. 
  • Carry out otolith reading of the study species (by project partner).
  • Produce a comprehensive report that explored the hypotheses on the population structures of the study species.
Achievements and highlights: 

The project made a substantial contribution to the knowledge of the population structure of 11 important species related to tuna fishing in the Indian Ocean, and insights new insights to species found in the IOTC area of competence. 

The project harnessed the skills and expertise of a wide range of researchers and fisheries scientists, as well as the wider fishing community, and a range of high-quality technical outputs were produced which will improve future assessments and advice to fisheries managers. 

Collaboration with regional partners in Australia (CSIRO), Indonesia (CFR and CSIRO), Maldives (MRC and CSIRO), Reunion (IRD) and the Seychelles (IRD, SFA and AZTI) played a major part in the success of the project and enhanced capacity for future sampling, monitoring and analysis.

Updates, resources and publications: 
INVESTIGATING THE STRUCTURE OF INDIAN OCEAN FISH POPULATIONS USING NEXT GENERATION TECHNOLOGIES
Project highlights
IOTC Circular 2015-009
IOTC Circular
IOTC ANNOUNCES EU GRANT AGREEMENT ON STOCK STRUCTURE FOR 2015-2017
IOTC News
POPULATION STRUCTURE OF IOTC SPECIES IN THE INDIAN OCEAN: ESTIMATION WITH NEXT GENERATION SEQUENCING TECHNOLOGIES AND OTOLITH MICRO-CHEMISTRY
Project document
Progress report to the 2018 IOTC Scientific Committee Meeting
Presentation
Natal signatures in otoliths of young-of-the-year yellowfin (Thunnus albacares) and skipjack (Katsuwonus pelamis) tuna from the Indian Ocean
Research paper
Genetic population structure of neritic tunas in the Indian Ocean from the PSTBS-IO Project (IOTC-2020-WPNT10-10)
Working Party document
Genetic population structure of sailfish, striped marlin, and swordfish in the Indian Ocean from the PSTBS-IO Project
Working Party document
Otolith microchemistry suggests probable population structuring in the Indian Ocean for the broadbill swordfish
Working Party document
Genome scans discriminate independent populations of the blue shark Prionace glauca
Working Party document
Investigating early stages of skipjack tuna (Katsuwonus pelamis) in the Indian Ocean using otolith chemistry
Working Party document
Otolith δ18O as a tracer of yellowfin tuna (Thunnus albacares) nursery origin in the Indian Ocean
Working Party document
Co-occurrence of genetically isolated groups of skipjack tuna (Katsuwonus pelamis) within the Indian Ocean
Working Party document
Investigating population structure of bigeye tuna in the Indian Ocean using otolith chemistry
Working Party document
Genetic population connectivity of yellowfin tuna in the Indian Ocean from the PSTBS-IO Project
Working Party document
Evidence of connectivity of bigeye tuna (Thunnus obesus) throughout the Indian Ocean inferred from genome-wide genetic markers
Working Party document

Footer menu

  • Home
  • The Commission
  • Science
  • Compliance
  • Data
  • Projects
  • Meetings
  • Documents
  • News
  • Educational Tools